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Software Links

Repositories

• GNU Free software foundation
• Linux
• Scientific applications on Linux
• The independent 3D and Virtual Reality resource!

Important software

• Emacs (Editor)
  • GNU Emacs Manual
• Latex (Typesetting)
  • Latex Project(Contains "The (not so) short Introduction to Latex2e")
  • Revtex4(Style files for electronic submission to Phys.Rev.)
  • PSTricks (a few smart latex packages)
• Xfig (Drawing program)
  • Xfig main page
• Gnuplot (x-y(-z) plotting tool)
  • Gnuplot
  • Gnuplot documentation (x-y(-z) plotting tool)
• Grace (WYSIWYG x-y plotting tool)
  • Grace home page
• CVS (Version control)
  • CVS main page
  • Notes on CVS on the sphingx web page -> "Developers kit" ->"CVS"
  • Learning CVS by Carlos Leonhard Woelz on 2004-02-20
  • Cervisia (graphical frontend to cvs for KDE)
  • Cervisia Manual
• Ghostview (Display and print postscript files)
  • Ghostview for Windows
  • Ghostscript manual
• jpeg2ps (wraps jpeg files into postscript, so that they can be embedded into latex files. -- works only with postscript level 2 and 3)
• imgtops2
• Plugger, a multimedia plugin for Unix

Mathematical Libraries

• Lapack description
• Automatically Tuned Linear Algebra Software (ATLAS); Lapack, Blas
• FFTW ("Fastest Fourier Transform in the West.")
• MPI (Message Passing Interface) and
• MPICH; Parallelisation Software and public domain implementation.
• Dataexplorer; Three-dimensional Visualization and rendering tool.

Fortran compilers

• G95 compiler
• Intel Fortran compiler IFC (Linux version free for noncommercial use)
• Absoft Fortran 90 compiler for Linux and Windows (commercial)
• Compaq Fortran 90 compiler documentation for Linux on Alphas
• PGI Fortran Compiler von Portland
• VAST Fortran 90 compiler
• Fortran90 compiler from Nagware

Interface with Windows

• VMWare (Emulates operating systems)
• Samba Software that makes for example Linux files inteligible to the Windows operating system. (download)
• PuTTY A Free Win32 Telnet/SSH Client

Other stuff

• Java-based, on-line biomolecular modeling package.
• NetCDF (Network Common Data Form), machine independent data access library.
• Prototype protein viewer (IBM)
• Web3D Repository; (VRML ans such...)
• Computer courses from Iowa State University
• Titrax for PalmOS, Time Tracker
• Titrax for Linux, Time Tracker
• Linux on laptops
• Java Lernen (Eine einfuehrung in Java)
• MOLDEN (A molecular viewer)
• ps2pdf (Converts postscript to pdf format)
• java4d molecular visualization system
• java on linux
• Web3D Consortium
• Tinker software tools for molecular design
• VTK-Kitware A visualization Toolkit